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QPHI-Qatari (QPHI-P-Q)

Version 1 (25k release)

Changelog
  • Lossless CRAM replaces the BAM format for reads alignement files
  • Sample IDs in CRAM and VCF files are updated to keep only the QPHI unique ID 
  • New Individual and cohort-level Quality Control (QC) steps introduced in the QGP Pre-Aggregation QC pipeline V1, to remove samples with sequencing issues
  • New file formats are delivered for each release (Plink, Hail, PCs, Relatedness, etc.)
  • New variants callers (SV, CNV, PGx, SMN, HLA, STRs, etc.
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